Welcome to milopy’s documentation!

Contents:

• API
  • Core functions: core
    • milopy.core
      • Module Contents
  • Plotting functions: plot
    • milopy.plot
      • Module Contents
  • Utility functions: utils
    • milopy.utils
      • Module Contents
• Differential abundance analysis in python with milopy
  • Load and prepare example dataset
  • Build KNN graph
  • Construct neighbourhoods
  • Count cells in neighbourhoods
  • Differential abundance testing with GLM
  • Visualize results on embedding
  • Visualize result by celltype
• API Reference
  • milopy
    • Subpackages
      • milopy.tests
    • Submodules
      • milopy.core
      • milopy.plot
      • milopy.utils
      • milopy.version
    • Package Contents
      • __version__