Index

_

__author__ (in module milopy.version) __author_email__ (in module milopy.version) __version__ (in module milopy) (in module milopy.version)

_get_palette_adata() (in module milopy.plot) _graph_spatialFDR() (in module milopy.core) _try_import_bioc_library() (in module milopy.core)

A

adata (in module milopy.tests.test_count_nhoods) adata() (in module milopy.tests.test_annotate_nhoods) adata_example (in module milopy.tests.test_make_nhoods) add_covariate_to_nhoods_var() (in module milopy.utils)

add_nhood_expression() (in module milopy.utils) anndata() (in module milopy.tests.test_DA_nhoods) (in module milopy.tests.test_io) annotate_nhoods() (in module milopy.utils) annotate_nhoods_continuous() (in module milopy.utils)

B

build_nhood_graph() (in module milopy.utils)

C

count_nhoods() (in module milopy.core)

D

DA_nhoods() (in module milopy.core)

M

make_nhoods() (in module milopy.core) milopy module milopy.core module milopy.plot module milopy.tests module milopy.tests.test_annotate_nhoods module milopy.tests.test_count_nhoods module milopy.tests.test_DA_nhoods module milopy.tests.test_io module milopy.tests.test_make_nhoods module

milopy.tests.test_plot module milopy.utils module milopy.version module module milopy milopy.core milopy.plot milopy.tests milopy.tests.test_annotate_nhoods milopy.tests.test_count_nhoods milopy.tests.test_DA_nhoods milopy.tests.test_io milopy.tests.test_make_nhoods milopy.tests.test_plot milopy.utils milopy.version

P

plot_DA_beeswarm() (in module milopy.plot) plot_nhood() (in module milopy.plot)

plot_nhood_counts_by_cond() (in module milopy.plot) plot_nhood_graph() (in module milopy.plot) prep_nhood_matrix() (in module milopy.tests.test_annotate_nhoods)

R

read_milo_adata() (in module milopy.utils)

T

test_correct_mean() (in module milopy.tests.test_annotate_nhoods) test_fdr() (in module milopy.tests.test_DA_nhoods) test_missing_covariate() (in module milopy.tests.test_DA_nhoods) test_neighbors_key() (in module milopy.tests.test_make_nhoods) test_nhood_annotation_cont_gives_error() (in module milopy.tests.test_annotate_nhoods) test_nhood_annotation_frac_range() (in module milopy.tests.test_annotate_nhoods) test_nhood_mean_range() (in module milopy.tests.test_annotate_nhoods)

test_nhood_sizes() (in module milopy.tests.test_make_nhoods) test_non_unique_covariate() (in module milopy.tests.test_DA_nhoods) test_number_of_nhoods() (in module milopy.tests.test_make_nhoods) test_pvalues() (in module milopy.tests.test_DA_nhoods) test_raise_error() (in module milopy.tests.test_io) test_sample_order() (in module milopy.tests.test_count_nhoods) test_sample_values() (in module milopy.tests.test_count_nhoods)

W

write_milo_adata() (in module milopy.utils)