milopy
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Contents:
API
Differential abundance analysis in python with
milopy
API Reference
milopy
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Index
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Index
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A
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B
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C
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D
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M
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P
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R
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T
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W
_
__author__ (in module milopy.version)
__author_email__ (in module milopy.version)
__version__ (in module milopy)
(in module milopy.version)
_get_palette_adata() (in module milopy.plot)
_graph_spatialFDR() (in module milopy.core)
_try_import_bioc_library() (in module milopy.core)
A
adata (in module milopy.tests.test_count_nhoods)
adata() (in module milopy.tests.test_annotate_nhoods)
adata_example (in module milopy.tests.test_make_nhoods)
add_covariate_to_nhoods_var() (in module milopy.utils)
add_nhood_expression() (in module milopy.utils)
anndata() (in module milopy.tests.test_DA_nhoods)
(in module milopy.tests.test_io)
annotate_nhoods() (in module milopy.utils)
annotate_nhoods_continuous() (in module milopy.utils)
B
build_nhood_graph() (in module milopy.utils)
C
count_nhoods() (in module milopy.core)
D
DA_nhoods() (in module milopy.core)
M
make_nhoods() (in module milopy.core)
milopy
module
milopy.core
module
milopy.plot
module
milopy.tests
module
milopy.tests.test_annotate_nhoods
module
milopy.tests.test_count_nhoods
module
milopy.tests.test_DA_nhoods
module
milopy.tests.test_io
module
milopy.tests.test_make_nhoods
module
milopy.tests.test_plot
module
milopy.utils
module
milopy.version
module
module
milopy
milopy.core
milopy.plot
milopy.tests
milopy.tests.test_annotate_nhoods
milopy.tests.test_count_nhoods
milopy.tests.test_DA_nhoods
milopy.tests.test_io
milopy.tests.test_make_nhoods
milopy.tests.test_plot
milopy.utils
milopy.version
P
plot_DA_beeswarm() (in module milopy.plot)
plot_nhood() (in module milopy.plot)
plot_nhood_counts_by_cond() (in module milopy.plot)
plot_nhood_graph() (in module milopy.plot)
prep_nhood_matrix() (in module milopy.tests.test_annotate_nhoods)
R
read_milo_adata() (in module milopy.utils)
T
test_correct_mean() (in module milopy.tests.test_annotate_nhoods)
test_fdr() (in module milopy.tests.test_DA_nhoods)
test_missing_covariate() (in module milopy.tests.test_DA_nhoods)
test_neighbors_key() (in module milopy.tests.test_make_nhoods)
test_nhood_annotation_cont_gives_error() (in module milopy.tests.test_annotate_nhoods)
test_nhood_annotation_frac_range() (in module milopy.tests.test_annotate_nhoods)
test_nhood_mean_range() (in module milopy.tests.test_annotate_nhoods)
test_nhood_sizes() (in module milopy.tests.test_make_nhoods)
test_non_unique_covariate() (in module milopy.tests.test_DA_nhoods)
test_number_of_nhoods() (in module milopy.tests.test_make_nhoods)
test_pvalues() (in module milopy.tests.test_DA_nhoods)
test_raise_error() (in module milopy.tests.test_io)
test_sample_order() (in module milopy.tests.test_count_nhoods)
test_sample_values() (in module milopy.tests.test_count_nhoods)
W
write_milo_adata() (in module milopy.utils)